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Landmark or Region: Examples: scaffold00001:2140000..2180000, scaffold00002:800000..1200000, scaffold00003:8000..16000, Sucrose, Peroxidase, P450, Gibberellin, Transcription factor.	Annotate GeneFinder Features Annotate Restriction Sites Download Decorated FASTA File Download Protein Sequence File Download Sequence File Download Track Data Find Short Oligos
Data Source Satsuma pseudomolecule v1.0 Satsuma v1.0	Scroll/Zoom:     Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 4.396 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

The following 31 regions match your request.

 

 

scaffold00423

 

scaffold00228

 

scaffold00283

 

scaffold00035

 

scaffold00233

 

scaffold00030

 

scaffold00331

 

scaffold00080

 

scaffold00044

 

 

 

 

 

 

 

scaffold00005

 

scaffold00135

 

scaffold00042

 

 

scaffold00001

 

 

scaffold00038

 

scaffold00012

 

 

scaffold00003

 

scaffold00004

 

scaffold00009

 

scaffold00033

 

scaffold00107

 

scaffold00077

Name	Type	Description	Position	Match Score
Ciunshiu_m01343.g	gene:	Sucrose synthase 6 (sp|Q9FX32|SUS6_ARATH) sucrose synthase 6 (AT1G73370.3); Sucrose synthase, plant/cyanobacteria	scaffold00423:127234..131629	10
Ciunshiu_m27974.g	gene:	Sucrose synthase (sp|P13708|SUSY_SOYBN) sucrose synthase 4 (AT3G43190.2); GLYCOSYLTRANSFERASE	scaffold00005:2515667..2521402	9
Ciunshiu_m12790.g	gene:	Sucrose synthase (sp|P13708|SUSY_SOYBN) sucrose synthase 4 (AT3G43190.2); GLYCOSYLTRANSFERASE	scaffold00005:2516402..2521402	9
Ciunshiu_m12797.g	gene:	Sucrose synthase (sp|P13708|SUSY_SOYBN) sucrose synthase 1 (AT5G20830.2); GLYCOSYLTRANSFERASE	scaffold00005:2557688..2561181	9
Ciunshiu_m17676.g	gene:	Sucrose transport protein SUC4 (sp|Q9FE59|SUC4_ARATH) sucrose transporter 4 (AT1G09960.1); Sucrose/H+ symporter, plant	scaffold00042:599412..605521	9
Ciunshiu_m19352.g	gene:	Sucrose synthase 6 (sp|Q9FX32|SUS6_ARATH) sucrose synthase 6 (AT1G73370.3); GLYCOSYLTRANSFERASE	scaffold00001:4878882..4882559	8
Ciunshiu_m23604.g	gene:	Sucrose synthase 2 (sp|O24301|SUS2_PEA) sucrose synthase 3 (AT4G02280.1); GLYCOSYLTRANSFERASE	scaffold00012:1831477..1837953	8
Ciunshiu_m21818.g	gene:	Sucrose synthase 2 (sp|Q00917|SUS2_ARATH) sucrose synthase 2 (AT5G49190.1); GLYCOSYLTRANSFERASE	scaffold00003:3124661..3130360	8
Ciunshiu_m01909.g	gene:	Sucrose transport protein SUC3 (sp|O80605|SUC3_ARATH) sucrose transporter 2 (AT2G02860.1); SUGAR TRANSPORTER	scaffold00004:1715272..1721562	7
Ciunshiu_m06251.g	gene:	Sucrose-phosphatase 2 (sp|Q5IH13|SPP2_TOBAC) Sucrose-6F-phosphate phosphohydrolase family protein (AT2G35840.4); GLYCOSYLTRANSFERASE	scaffold00233:305804..311111	6
Ciunshiu_m25739.g	gene:	Probable sucrose-phosphate synthase 1 (sp|O22060|SPSA1_CITUN) sucrose phosphate synthase 1F (AT5G20280.1); GLYCOSYLTRANSFERASE	scaffold00030:938781..944083	6
Ciunshiu_m12647.g	gene:	Probable sucrose-phosphate synthase 1 (sp|O22060|SPSA1_CITUN) sucrose phosphate synthase 1F (AT5G20280.1); GLYCOSYLTRANSFERASE	scaffold00005:1503281..1510594	6
Ciunshiu_m19125.g	gene:	Sucrose-phosphatase 2 (sp|Q5IH13|SPP2_TOBAC) Sucrose-6F-phosphate phosphohydrolase family protein (AT2G35840.3); GLYCOSYLTRANSFERASE	scaffold00001:3131851..3135960	6
Ciunshiu_m18323.g	gene:	Sucrose transport protein SUC2 (sp|Q39231|SUC2_ARATH) sucrose-proton symporter 1 (AT1G71880.1); SUGAR TRANSPORTER	scaffold00009:1279319..1281586	6
Ciunshiu_m11782.g	gene:	Probable sucrose-phosphate synthase 3 (sp|Q8RY24|SPSA3_ARATH) sucrose phosphate synthase 3F (AT1G04920.1); GLYCOSYLTRANSFERASE	scaffold00033:1060478..1068662	6
Ciunshiu_m13090.g	gene:	Probable sucrose-phosphate synthase 4 (sp|F4JLK2|SPSA4_ARATH) Sucrose-phosphate synthase family protein (AT4G10120.5); GLYCOSYLTRANSFERASE	scaffold00107:66303..75401	6
Ciunshiu_m00726.g	gene:	Sucrose nonfermenting 4-like protein (sp|Q944A6|SNF4_ARATH) sucrose nonfermenting-like protein (AT1G09020.1); AMP-ACTIVATED protein kinase, GAMMA regulatory SUBUNIT	scaffold00228:214417..220473	4
Ciunshiu_m07048.g	gene:	Galactinol--sucrose galactosyltransferase (sp|Q8VWN6|RFS_PEA) Raffinose synthase family protein (AT5G40390.1)	scaffold00038:484498..488162	4
Ciunshiu_m21889.g	gene:	Sucrose nonfermenting 4-like protein (sp|Q944A6|SNF4_ARATH) sucrose nonfermenting-like protein (AT1G09020.1); AMP-ACTIVATED protein kinase, GAMMA regulatory SUBUNIT	scaffold00003:3618223..3625353	4
Ciunshiu_m04103.g	gene:	Probable galactinol--sucrose galactosyltransferase 2 (sp|Q94A08|RFS2_ARATH) seed imbibition 2 (AT3G57520.1)	scaffold00283:213063..219586	3
Ciunshiu_m01614.g	gene:	Probable galactinol--sucrose galactosyltransferase 5 (sp|Q9FND9|RFS5_ARATH) Raffinose synthase family protein (AT5G40390.1)	scaffold00035:919387..922891	3
Ciunshiu_m19500.g	gene:	Probable galactinol--sucrose galactosyltransferase 2 (sp|Q94A08|RFS2_ARATH) seed imbibition 1 (AT1G55740.1)	scaffold00331:108934..114826	3
Ciunshiu_m27967.g	gene:	Probable galactinol--sucrose galactosyltransferase 6 (sp|Q8RX87|RFS6_ARATH) Raffinose synthase family protein (AT5G20250.3)	scaffold00005:1588757..1592040	3
Ciunshiu_m12659.g	gene:	Probable galactinol--sucrose galactosyltransferase 6 (sp|Q8RX87|RFS6_ARATH) Raffinose synthase family protein (AT5G20250.3)	scaffold00005:1588757..1592040	3
Ciunshiu_m12882.g	gene:	Probable galactinol--sucrose galactosyltransferase 1 (sp|Q84VX0|RFS1_ARATH) seed imbibition 1 (AT1G55740.1)	scaffold00005:3159840..3163729	3
Ciunshiu_m07003.g	gene:	Probable galactinol--sucrose galactosyltransferase 2 (sp|Q94A08|RFS2_ARATH) seed imbibition 2 (AT3G57520.3)	scaffold00038:84041..90337	3
Ciunshiu_m24055.g	gene:	SWI/SNF complex subunit SWI3C (sp|Q9XI07|SWI3C_ARATH) SWITCH/sucrose nonfermenting 3C (AT1G21700.1); Aspartic peptidase	scaffold00077:618995..625254	3
Ciunshiu_m01347.g	gene:	Sucrose synthase 7 (sp|Q7XNX6|SUS7_ORYSJ) DHHA1 domain protein (AT1G53345.1); TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE family member	scaffold00423:128102..134938	2
Ciunshiu_m00069.g	gene:	Serine/threonine-protein kinase SAPK10 (sp|Q75H77|SAPKA_ORYSJ) sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (AT5G66880.1); SERINE/THREONINE kinase	scaffold00080:682675..686849	2
Ciunshiu_m25450.g	gene:	Tocopherol cyclase, chloroplastic (sp|Q94FY7|TOCC_ARATH) tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (AT4G32770.1); Tocopherol cyclase	scaffold00044:288920..296287	2
Ciunshiu_m24374.g	gene:	SWI/SNF complex subunit SWI3A (sp|Q8W475|SWI3A_ARATH) SWITCH/sucrose nonfermenting 3A (AT2G47620.1); SWI/SNF COMPLEX-related	scaffold00135:282953..287590	2

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3'-UTR	6-frame translation	Simple sequence repeat (SSR) [?]
3-frame translation (forward)	LTR-retrotransposons [?]	Transcript [?]
3-frame translation (reverse)	Masked repeat region [?]
5'-UTR	Nucleotide sequence

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