Browser Select Tracks Snapshots Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: scaffold00001:2140000..2180000, scaffold00002:800000..1200000, scaffold00003:8000..16000, Sucrose, Peroxidase, P450, Gibberellin, Transcription factor.	Annotate GeneFinder Features Annotate Restriction Sites Download Decorated FASTA File Download Protein Sequence File Download Sequence File Download Track Data
Data Source Satsuma pseudomolecule v1.0 Satsuma v1.0	Scroll/Zoom:     Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1.234 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

The following 43 regions match your request.

 

scaffold00004

 

 

 

scaffold00015

 

scaffold00032

 

scaffold00018

 

scaffold00019

 

 

scaffold00003

 

 

scaffold00078

 

scaffold04483

 

scaffold00002

 

scaffold07578

 

 

scaffold01444

 

scaffold00192

 

scaffold00049

 

 

scaffold00026

 

scaffold00058

 

scaffold00338

 

scaffold00047

 

 

 

 

scaffold00207

 

scaffold01129

 

scaffold00498

 

scaffold00084

 

scaffold00473

 

scaffold00021

 

 

scaffold00012

 

scaffold00077

 

scaffold00009

 

scaffold00063

 

scaffold00013

 

scaffold01116

 

scaffold00008

 

scaffold00359

 

scaffold00006

 

scaffold00229

Name	Type	Description	Position	Match Score
Ciunshiu_m06914.g	gene:	Gibberellin-regulated protein 6 (sp|Q6NMQ7|GASA6_ARATH) Gibberellin-regulated family protein (AT1G74670.1)	scaffold04483:829..1918	7
Ciunshiu_m18348.g	gene:	Gibberellin-regulated protein 9 (sp|Q8GWK5|GASA9_ARATH) Gibberellin-regulated family protein (AT1G22690.2)	scaffold00009:1356970..1358203	7
Ciunshiu_m14253.g	gene:	Gibberellin 20 oxidase 1-B (sp|O04706|GAO1B_WHEAT) gibberellin 20 oxidase 2 (AT5G51810.1); Clavaminate synthase-like	scaffold00015:1028887..1030568	6
Ciunshiu_m06742.g	gene:	Gibberellin-regulated protein 14 (sp|Q9LFR3|GASAE_ARATH) Gibberellin-regulated family protein (AT5G14920.1); EXTENSIN, PROLINE-rich protein	scaffold00032:946791..948110	6
Ciunshiu_m09371.g	gene:	Gibberellin-regulated protein 6 (sp|Q6NMQ7|GASA6_ARATH) Gibberellin-regulated family protein (AT1G74670.1); EXTENSIN, PROLINE-rich protein	scaffold07578:882..1503	6
Ciunshiu_m01181.g	gene:	Gibberellin-regulated protein 14 (sp|Q9LFR3|GASAE_ARATH) Gibberellin-regulated family protein (AT5G14920.1); EXTENSIN, PROLINE-rich protein	scaffold00058:579553..580170	6
Ciunshiu_m24577.g	gene:	Gibberellin 3-beta-dioxygenase 1 (sp|O24648|G3OX_PEA)	scaffold00207:175528..175773	6
Ciunshiu_m14487.g	gene:	Gibberellin-regulated protein 12 (sp|Q6GKX7|GASAC_ARATH) Gibberellin-regulated family protein (AT2G30810.1); EXTENSIN, PROLINE-rich protein	scaffold00498:117662..128482	6
Ciunshiu_m22896.g	gene:	Gibberellin-regulated protein 4 (sp|P46690|GASA4_ARATH) Gibberellin-regulated family protein (AT1G74670.1); EXTENSIN, PROLINE-rich protein	scaffold00084:53662..54866	6
Ciunshiu_m21399.g	gene:	Gibberellin 2-beta-dioxygenase (sp|Q9XG83|G2OX_PHACN) gibberellin 2-oxidase (AT1G30040.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00003:457063..458887	5
Ciunshiu_m24003.g	gene:	Gibberellin 20 oxidase 2 (sp|Q0JH50|GAOX2_ORYSJ) gibberellin 20 oxidase 2 (AT5G51810.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00077:217132..218581	5
Ciunshiu_m01808.g	gene:	Gibberellin-regulated protein 14 (sp|Q9LFR3|GASAE_ARATH); EXTENSIN, PROLINE-rich protein	scaffold00004:1108124..1109368	4
Ciunshiu_m14373.g	gene:	Protein GAST1 (sp|P27057|GAST1_SOLLC) Gibberellin-regulated family protein (AT3G10185.1)	scaffold00015:1700748..1702968	4
Ciunshiu_m10333.g	gene:	Gibberellin 2-beta-dioxygenase 8 (sp|O49561|G2OX8_ARATH) gibberellin 2-oxidase 8 (AT4G21200.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00019:1183876..1185139	4
Ciunshiu_m21688.g	gene:	Gibberellin 2-beta-dioxygenase 2 (sp|Q9XHM5|G2OX2_PEA) gibberellin 2-oxidase 4 (AT1G47990.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00003:2218458..2221558	4
Ciunshiu_m06387.g	gene:	Gibberellin 2-beta-dioxygenase 8 (sp|O49561|G2OX8_ARATH) gibberellin 2-oxidase 8 (AT4G21200.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00078:172155..174727	4
Ciunshiu_m06397.g	gene:	Gibberellin 2-beta-dioxygenase 8 (sp|O49561|G2OX8_ARATH) gibberellin 2-oxidase 8 (AT4G21200.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00078:239862..243330	4
Ciunshiu_m05431.g	gene:	Gibberellin 2-beta-dioxygenase 8 (sp|O49561|G2OX8_ARATH) gibberellin 2-oxidase 8 (AT4G21200.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00002:1957087..1963607	4
Ciunshiu_m07356.g	gene:	Protein GAST1 (sp|P27057|GAST1_SOLLC) Gibberellin-regulated family protein (AT3G10185.1)	scaffold00049:596409..598272	4
Ciunshiu_m15147.g	gene:	Gibberellin 2-beta-dioxygenase 2 (sp|Q9XHM5|G2OX2_PEA) gibberellin 2-oxidase 6 (AT1G02400.2); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00026:284335..286993	4
Ciunshiu_m24575.g	gene:	Gibberellin 3-beta-dioxygenase 1 (sp|O24648|G3OX_PEA) gibberellin 3-oxidase 2 (AT1G80340.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00207:94264..95662	4
Ciunshiu_m24574.g	gene:	Gibberellin 3-beta-dioxygenase 1 (sp|O24648|G3OX_PEA) gibberellin 3-oxidase 2 (AT1G80340.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00207:121565..122927	4
Ciunshiu_m24576.g	gene:	Gibberellin 3-beta-dioxygenase 1 (sp|O24648|G3OX_PEA); Isopenicillin N synthase-like	scaffold00207:176990..177184	4
Ciunshiu_m12200.g	gene:	Gibberellin 2-beta-dioxygenase 1 (sp|Q9SQ80|G2OX1_PEA) gibberellin 2-beta-dioxygenase (AT1G78440.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00473:107734..109329	4
Ciunshiu_m22599.g	gene:	Gibberellin-regulated protein 5 (sp|Q84J95|GASA5_ARATH); EXTENSIN, PROLINE-rich protein	scaffold00021:451629..452762	4
Ciunshiu_m09507.g	gene:	Gibberellin 3-beta-dioxygenase 3 (sp|Q9SVS8|G3OX3_ARATH) gibberellin 3-oxidase 1 (AT1G15550.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00063:290346..294581	4
Ciunshiu_m14603.g	gene:	Gibberellin 3-beta-dioxygenase 1 (sp|O24648|G3OX_PEA) gibberellin 3-oxidase 1 (AT1G15550.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00229:108319..109796	4
Ciunshiu_m24688.g	gene:	Snakin-2 (sp|Q93X17|SNAK2_SOLTU) Gibberellin-regulated family protein (AT2G18420.2); EXTENSIN, PROLINE-rich protein	scaffold00018:494248..495280	3
Ciunshiu_m16496.g	gene:	Chitin-inducible gibberellin-responsive protein 1 (sp|Q69VG1|CIGR1_ORYSJ) GRAS family transcription factor (AT5G48150.4)	scaffold01444:1388..8250	3
Ciunshiu_m28267.g	gene:	Chitin-inducible gibberellin-responsive protein 1 (sp|Q69VG1|CIGR1_ORYSJ) GRAS family transcription factor (AT5G48150.1)	scaffold01444:1388..9400	3
Ciunshiu_m27025.g	gene:	Peamaclein (sp|P86888|PMLN_PRUPE) Gibberellin-regulated family protein (AT2G39540.1); EXTENSIN, PROLINE-rich protein	scaffold00338:42834..43824	3
Ciunshiu_m17156.g	gene:	Snakin-1 (sp|Q948Z4|SNAK1_SOLTU) Gibberellin-regulated family protein (AT2G14900.1); EXTENSIN, PROLINE-rich protein	scaffold00047:249314..249912	3
Ciunshiu_m23481.g	gene:	Gibberellin receptor GID1B (sp|Q9LYC1|GID1B_ARATH) alpha/beta-Hydrolases superfamily protein (AT3G63010.1)	scaffold00012:922733..927098	3
Ciunshiu_m15565.g	gene:	Snakin-2 (sp|Q93X17|SNAK2_SOLTU) Gibberellin-regulated family protein (AT5G14920.1); EXTENSIN, PROLINE-rich protein	scaffold00008:295375..296161	3
Ciunshiu_m14357.g	gene:	Gibberellin 2-beta-dioxygenase 7 (sp|Q9C6I4|G2OX7_ARATH) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G23340.1); Clavaminate synthase-like	scaffold00015:1502578..1503358	2
Ciunshiu_m00408.g	gene:	Gibberellin receptor GID1C (sp|Q940G6|GID1C_ARATH) alpha/beta-Hydrolases superfamily protein (AT5G27320.1); member OF 'GDXG' family OF LIPOLYTIC enzymeS	scaffold00192:129685..132622	2
Ciunshiu_m15253.g	gene:	Gibberellin 20 oxidase 2 (sp|Q0JH50|GAOX2_ORYSJ) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G10490.1); Clavaminate synthase-like	scaffold00026:1028132..1029522	2
Ciunshiu_m28744.g	gene:	Gibberellin receptor GID1B (sp|Q9LYC1|GID1B_ARATH) alpha/beta-Hydrolases superfamily protein (AT3G63010.1); member OF 'GDXG' family OF LIPOLYTIC enzymeS	scaffold00012:922819..927098	2
Ciunshiu_m06928.g	gene:	Gibberellin 20 oxidase 3 (sp|Q39112|GAOX3_ARATH) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G25420.1); Clavaminate synthase-like	scaffold01116:20171..22391	2
Ciunshiu_m08452.g	gene:	Gibberellin 20 oxidase 1-B (sp|O04706|GAO1B_WHEAT) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G25420.1); Clavaminate synthase-like	scaffold00359:26014..29014	2
Ciunshiu_m26106.g	gene:	Gibberellin 2-beta-dioxygenase 8 (sp|O49561|G2OX8_ARATH) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT5G58660.1); Clavaminate synthase-like	scaffold00006:373345..377963	2
Ciunshiu_m09470.g	gene:	Gibberellin 20 oxidase 1 (sp|Q39110|GAOX1_ARATH) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G10490.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold01129:21685..22717	1
Ciunshiu_m01003.g	gene:	Gibberellin 20 oxidase 1 (sp|Q39110|GAOX1_ARATH) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AT4G25420.1); OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE family protein	scaffold00013:1032492..1034163	1

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 General

 General

 All on All off 

3'-UTR	6-frame translation	Simple sequence repeat (SSR) [?]
3-frame translation (forward)	LTR-retrotransposons [?]	Transcript [?]
3-frame translation (reverse)	Masked repeat region [?]
5'-UTR	Nucleotide sequence

 Genes

 Genes

 All on All off 

CDS [?]

Gene

 Region

 Region

 All on All off 

GC Content [?]

 Analysis

 Analysis

 All on All off 

GeneFinder Features

Restriction Sites

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024 1280 1400 1650 1800 2050 2560 2800 3200 3600 4000	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 200000 80000 40000 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.